Index

A

acquire_generation_param() (kalmus.tkinter_windows.GenerateBarcodeWindow.GenerateBarcodeWindow method)

add_meta_data() (kalmus.barcodes.Barcode.Barcode method) automatic_find_letterbox() (kalmus.barcodes.Barcode.Barcode method)

B

Barcode (class in kalmus.barcodes.Barcode) BarcodeGenerator (class in kalmus.barcodes.BarcodeGenerator) browse_folder() (kalmus.tkinter_windows.GenerateBarcodeWindow.GenerateBarcodeWindow method) (kalmus.tkinter_windows.LoadJsonWindow.LoadJsonWindow method) (kalmus.tkinter_windows.plot_barcodes_windows.PlotBarcodeWindow.OutputCSVWindow method) (kalmus.tkinter_windows.SaveBarcodeWindow.SaveBarcodeWindow method) (kalmus.tkinter_windows.SaveImageWindow.SaveImageWindow method)

build_barcode() (kalmus.tkinter_windows.LoadJsonWindow.LoadJsonWindow method) build_barcode_from_json() (in module kalmus.barcodes.BarcodeGenerator)

C

change_view() (kalmus.tkinter_windows.plot_barcodes_windows.PlotBarcodeWindow.HueLight3DBarPlotWindow method) check_meta_info() (kalmus.tkinter_windows.MainWindowVersion2.MainWindow method) (kalmus.tkinter_windows.meta_info_windows.WhichBarcodeCheckMeta.WhichBarcodeCheckMeta method) CheckTimePointWindow (class in kalmus.tkinter_windows.time_points_windows.CheckTimePointWindow) close_window() (kalmus.tkinter_windows.MainWindowVersion2.MainWindow method) color_of_regions() (in module kalmus.utils.artist) ColorHistogramWindow (class in kalmus.tkinter_windows.plot_barcodes_windows.PlotBarcodeWindow) compare_needleman_wunsch() (in module kalmus.utils.measure_utils) compare_smith_waterman() (in module kalmus.utils.measure_utils)

compare_two_barcodes() (in module kalmus.tkinter_windows.gui_utils) compute_brightest_color_and_brightness() (in module kalmus.utils.artist) compute_dominant_color() (in module kalmus.utils.artist) compute_mean_color() (in module kalmus.utils.artist) compute_median_color() (in module kalmus.utils.artist) compute_mode_color() (in module kalmus.utils.artist) compute_percents_of_labels() (in module kalmus.utils.artist) contrast_between_regions() (in module kalmus.utils.artist) contrast_ratio() (in module kalmus.utils.artist) cross_correlation() (in module kalmus.utils.measure_utils)

D

disable_generate_button() (kalmus.tkinter_windows.GenerateBarcodeWindow.GenerateBarcodeWindow method)

disable_setup() (kalmus.tkinter_windows.GenerateBarcodeWindow.GenerateBarcodeWindow method) display_color() (kalmus.tkinter_windows.MainWindowVersion2.MainWindow method)

E

enable_generate_button() (kalmus.tkinter_windows.GenerateBarcodeWindow.GenerateBarcodeWindow method) enable_rescale_frames_in_generation() (kalmus.barcodes.Barcode.Barcode method) enable_save_frames() (kalmus.barcodes.Barcode.Barcode method)

enable_setup() (kalmus.tkinter_windows.GenerateBarcodeWindow.GenerateBarcodeWindow method) enable_user_defined_letterbox() (kalmus.barcodes.Barcode.Barcode method) extract_region_with_index() (in module kalmus.utils.visualization_utils)

F

fill_default_setting() (kalmus.tkinter_windows.GenerateBarcodeWindow.GenerateBarcodeWindow method) find_bright_spots() (in module kalmus.utils.artist) find_film_letterbox() (kalmus.barcodes.Barcode.Barcode method)

find_letter_box_from_videos() (in module kalmus.utils.artist) flatten_image() (in module kalmus.utils.artist) foreback_segmentation() (in module kalmus.barcodes.Barcode) frame_unit() (kalmus.tkinter_windows.GenerateBarcodeWindow.GenerateBarcodeWindow method)

G

generate_barcode() (kalmus.barcodes.BarcodeGenerator.BarcodeGenerator method) (kalmus.tkinter_windows.GenerateBarcodeWindow.GenerateBarcodeWindow method) (kalmus.tkinter_windows.MainWindowVersion2.MainWindow method) generate_barcode_from_json() (kalmus.barcodes.BarcodeGenerator.BarcodeGenerator method) generate_barcode_thread() (kalmus.tkinter_windows.GenerateBarcodeWindow.GenerateBarcodeWindow method) generate_brightness_string_from_brightness_barcode() (in module kalmus.utils.measure_utils) generate_hue_strings_from_color_barcode() (in module kalmus.utils.measure_utils) generate_new_plot_with_changes() (kalmus.tkinter_windows.plot_barcodes_windows.PlotBarcodeWindow.HueLight3DBarPlotWindow method) GenerateBarcodeWindow (class in kalmus.tkinter_windows.GenerateBarcodeWindow) get_barcode() (kalmus.barcodes.Barcode.Barcode method) (kalmus.barcodes.BarcodeGenerator.BarcodeGenerator method)

get_color_from_frame() (kalmus.barcodes.Barcode.Barcode method) get_comparison_result_text() (in module kalmus.tkinter_windows.gui_utils) get_contrast_matrix_and_labeled_image() (in module kalmus.utils.artist) get_frames_image_for_display() (kalmus.tkinter_windows.time_points_windows.CheckTimePointWindow.CheckTimePointWindow method) get_hr_min_sec_from_tot_sec() (kalmus.tkinter_windows.meta_info_windows.MetaInfoWindow.MetaInfoWindow method) get_letter_box_from_frames() (in module kalmus.utils.artist) get_rag() (in module kalmus.utils.artist) get_time() (in module kalmus.tkinter_windows.gui_utils) get_time_str() (kalmus.tkinter_windows.meta_info_windows.MetaInfoWindow.MetaInfoWindow method) grabcut_foreback_segmentation() (in module kalmus.utils.artist)

H

HueLight3DBarPlotWindow (class in kalmus.tkinter_windows.plot_barcodes_windows.PlotBarcodeWindow)

HueLightScatterPlotWindow (class in kalmus.tkinter_windows.plot_barcodes_windows.PlotBarcodeWindow)

I

inspect_barcode() (kalmus.tkinter_windows.plot_barcodes_windows.WhichBarcodeInspectWindow.WhichBarcodeInspectWindow method)

instantiate_barcode_object() (kalmus.barcodes.BarcodeGenerator.BarcodeGenerator method)

K

kalmus.barcodes.Barcode module kalmus.barcodes.BarcodeGenerator module kalmus.tkinter_windows.GenerateBarcodeWindow module kalmus.tkinter_windows.gui_utils module kalmus.tkinter_windows.LoadJsonWindow module kalmus.tkinter_windows.LoadStackWindow module kalmus.tkinter_windows.MainWindowVersion2 module kalmus.tkinter_windows.meta_info_windows.MetaInfoWindow module kalmus.tkinter_windows.meta_info_windows.SpecifyMetaDataWindow module kalmus.tkinter_windows.meta_info_windows.WhichBarcodeCheckMeta module

kalmus.tkinter_windows.plot_barcodes_windows.PlotBarcodeWindow module kalmus.tkinter_windows.plot_barcodes_windows.WhichBarcodeInspectWindow module kalmus.tkinter_windows.ReshapeBarcodeWindow module kalmus.tkinter_windows.SaveBarcodeWindow module kalmus.tkinter_windows.SaveImageWindow module kalmus.tkinter_windows.StatsInfoWindow module kalmus.tkinter_windows.time_points_windows.CheckTimePointWindow module kalmus.utils.artist module kalmus.utils.measure_utils module kalmus.utils.visualization_utils module

L

load_json_barcode() (kalmus.tkinter_windows.MainWindowVersion2.MainWindow method) load_stack() (kalmus.tkinter_windows.LoadStackWindow.LoadStackWindow method) load_stack_barcode() (kalmus.tkinter_windows.MainWindowVersion2.MainWindow method)

LoadJsonWindow (class in kalmus.tkinter_windows.LoadJsonWindow) LoadStackWindow (class in kalmus.tkinter_windows.LoadStackWindow) local_cross_correlation() (in module kalmus.utils.measure_utils)

M

MainWindow (class in kalmus.tkinter_windows.MainWindowVersion2) MetaInfoWindow (class in kalmus.tkinter_windows.meta_info_windows.MetaInfoWindow) module kalmus.barcodes.Barcode kalmus.barcodes.BarcodeGenerator kalmus.tkinter_windows.GenerateBarcodeWindow kalmus.tkinter_windows.gui_utils kalmus.tkinter_windows.LoadJsonWindow kalmus.tkinter_windows.LoadStackWindow kalmus.tkinter_windows.MainWindowVersion2 kalmus.tkinter_windows.meta_info_windows.MetaInfoWindow kalmus.tkinter_windows.meta_info_windows.SpecifyMetaDataWindow kalmus.tkinter_windows.meta_info_windows.WhichBarcodeCheckMeta kalmus.tkinter_windows.plot_barcodes_windows.PlotBarcodeWindow kalmus.tkinter_windows.plot_barcodes_windows.WhichBarcodeInspectWindow kalmus.tkinter_windows.ReshapeBarcodeWindow kalmus.tkinter_windows.SaveBarcodeWindow kalmus.tkinter_windows.SaveImageWindow kalmus.tkinter_windows.StatsInfoWindow kalmus.tkinter_windows.time_points_windows.CheckTimePointWindow kalmus.utils.artist kalmus.utils.measure_utils kalmus.utils.visualization_utils

N

nrmse_similarity() (in module kalmus.utils.measure_utils)

O

output_csv() (kalmus.tkinter_windows.plot_barcodes_windows.PlotBarcodeWindow.PlotBarcodeWindow method)

output_csv_file() (kalmus.tkinter_windows.plot_barcodes_windows.PlotBarcodeWindow.OutputCSVWindow method) OutputCSVWindow (class in kalmus.tkinter_windows.plot_barcodes_windows.PlotBarcodeWindow)

P

paint_gray_hist() (in module kalmus.tkinter_windows.gui_utils) paint_hue_hist() (in module kalmus.tkinter_windows.gui_utils)

PlotBarcodeWindow (class in kalmus.tkinter_windows.plot_barcodes_windows.PlotBarcodeWindow) process_frame() (kalmus.barcodes.Barcode.Barcode method)

Q

quit() (kalmus.tkinter_windows.GenerateBarcodeWindow.GenerateBarcodeWindow method) (kalmus.tkinter_windows.MainWindowVersion2.MainWindow method)

R

rag_to_matrix() (in module kalmus.utils.artist) random_sample_pixels() (in module kalmus.utils.artist) read_video() (kalmus.barcodes.Barcode.Barcode method) refresh_text() (kalmus.tkinter_windows.meta_info_windows.MetaInfoWindow.MetaInfoWindow method) remove_letter_box_from_frame() (kalmus.barcodes.Barcode.Barcode method) reshape() (kalmus.tkinter_windows.ReshapeBarcodeWindow.ReshapeBarcodeWindow method)

reshape_barcode() (kalmus.tkinter_windows.MainWindowVersion2.MainWindow method) reshape_resize_barcode() (kalmus.tkinter_windows.ReshapeBarcodeWindow.ReshapeBarcodeWindow method) ReshapeBarcodeWindow (class in kalmus.tkinter_windows.ReshapeBarcodeWindow) resize() (kalmus.tkinter_windows.ReshapeBarcodeWindow.ReshapeBarcodeWindow method) resource_path() (in module kalmus.tkinter_windows.gui_utils) RGBColorCubeWindow (class in kalmus.tkinter_windows.plot_barcodes_windows.PlotBarcodeWindow)

S

save_as_json() (kalmus.barcodes.Barcode.Barcode method) save_barcode_on_stack() (kalmus.tkinter_windows.MainWindowVersion2.MainWindow method) save_frames() (kalmus.barcodes.Barcode.Barcode method) save_image() (kalmus.tkinter_windows.SaveImageWindow.SaveImageWindow method) save_image_from_display() (kalmus.tkinter_windows.MainWindowVersion2.MainWindow method) save_stack() (kalmus.tkinter_windows.SaveBarcodeWindow.SaveBarcodeWindow method) SaveBarcodeWindow (class in kalmus.tkinter_windows.SaveBarcodeWindow) SaveImageWindow (class in kalmus.tkinter_windows.SaveImageWindow) scale() (kalmus.tkinter_windows.ReshapeBarcodeWindow.ReshapeBarcodeWindow method) set_letterbox_bound() (kalmus.barcodes.Barcode.Barcode method) shade_bar_plot() (kalmus.tkinter_windows.plot_barcodes_windows.PlotBarcodeWindow.HueLight3DBarPlotWindow method) show_barcode() (kalmus.tkinter_windows.MainWindowVersion2.MainWindow method) show_color() (in module kalmus.utils.visualization_utils) show_color_histogram() (kalmus.tkinter_windows.plot_barcodes_windows.PlotBarcodeWindow.PlotBarcodeWindow method)

show_color_in_bar() (kalmus.tkinter_windows.plot_barcodes_windows.PlotBarcodeWindow.PlotBarcodeWindow method) show_color_in_scatter() (kalmus.tkinter_windows.plot_barcodes_windows.PlotBarcodeWindow.PlotBarcodeWindow method) show_colors_in_cube() (in module kalmus.utils.visualization_utils) show_colors_in_hue_light_3d_bar_plot() (in module kalmus.utils.visualization_utils) show_colors_in_hue_light_scatter_plot() (in module kalmus.utils.visualization_utils) show_colors_in_sequence() (in module kalmus.utils.visualization_utils) show_high_contrast_region() (in module kalmus.utils.visualization_utils) show_low_contrast_region() (in module kalmus.utils.visualization_utils) show_RGB_color_in_cube() (kalmus.tkinter_windows.plot_barcodes_windows.PlotBarcodeWindow.PlotBarcodeWindow method) specify_data() (kalmus.tkinter_windows.GenerateBarcodeWindow.GenerateBarcodeWindow method) SpecifyMetaDataWindow (class in kalmus.tkinter_windows.meta_info_windows.SpecifyMetaDataWindow) ssim_similarity() (in module kalmus.utils.measure_utils) stats_info() (kalmus.tkinter_windows.MainWindowVersion2.MainWindow method) StatsInfoWindow (class in kalmus.tkinter_windows.StatsInfoWindow)

T

time_pick() (kalmus.tkinter_windows.MainWindowVersion2.MainWindow method) time_unit() (kalmus.tkinter_windows.GenerateBarcodeWindow.GenerateBarcodeWindow method)

turn_on_plot_axis() (kalmus.tkinter_windows.plot_barcodes_windows.PlotBarcodeWindow.HueLight3DBarPlotWindow method) turn_on_plot_grid() (kalmus.tkinter_windows.plot_barcodes_windows.PlotBarcodeWindow.HueLight3DBarPlotWindow method)

U

update_axes_ticks() (in module kalmus.tkinter_windows.gui_utils) update_axes_title() (in module kalmus.tkinter_windows.gui_utils) update_graph() (in module kalmus.tkinter_windows.gui_utils) update_hist() (in module kalmus.tkinter_windows.gui_utils) update_json_filename() (kalmus.tkinter_windows.GenerateBarcodeWindow.GenerateBarcodeWindow method) update_meta_info() (kalmus.tkinter_windows.meta_info_windows.MetaInfoWindow.MetaInfoWindow method) (kalmus.tkinter_windows.meta_info_windows.SpecifyMetaDataWindow.SpecifyMetaDataWindow method)

update_other_entry() (kalmus.tkinter_windows.meta_info_windows.SpecifyMetaDataWindow.SpecifyMetaDataWindow method) update_rescale_entry() (kalmus.tkinter_windows.GenerateBarcodeWindow.GenerateBarcodeWindow method) update_save_frame_entry() (kalmus.tkinter_windows.GenerateBarcodeWindow.GenerateBarcodeWindow method) update_scale_factor() (kalmus.tkinter_windows.ReshapeBarcodeWindow.ReshapeBarcodeWindow method) update_size_entry() (kalmus.tkinter_windows.SaveImageWindow.SaveImageWindow method) update_size_label() (kalmus.tkinter_windows.ReshapeBarcodeWindow.ReshapeBarcodeWindow method) update_thread_entry() (kalmus.tkinter_windows.GenerateBarcodeWindow.GenerateBarcodeWindow method) updated_new_barcode() (kalmus.tkinter_windows.ReshapeBarcodeWindow.ReshapeBarcodeWindow method)

W

watershed_segmentation() (in module kalmus.utils.artist)

WhichBarcodeCheckMeta (class in kalmus.tkinter_windows.meta_info_windows.WhichBarcodeCheckMeta) WhichBarcodeInspectWindow (class in kalmus.tkinter_windows.plot_barcodes_windows.WhichBarcodeInspectWindow)